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Conference Paper

Promponas, V. J.. "A simple clustering approach for pathogenic strain identification based on local and global amino acid compositional signatures from genomic sequences: the Escherichia genus case." In Information Technology and Applications in Biomedicine, 2009. ITAB 2009. 9th International Conference on, 1-4. IEEE, 2009.

Journal Article

Promponas, V. J., Ioannis Iliopoulos, and Christos A. Ouzounis. "Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure." Standards in genomic sciences 10 (2015): 108.

Chasapi, Anastasia, V. J. Promponas, and Christos A. Ouzounis. "The bioinformatics wealth of nations." Bioinformatics (2020).

Pavlopoulos, Georgios A., V. J. Promponas, Christos A. Ouzounis, and Ioannis Iliopoulos. "Biological information extraction and co-occurrence analysis." Methods in molecular biology (Clifton, N.J.) 1159 (2014): 77-92.

Papanikolaou, Nikolas, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, V. J. Promponas, and Ioannis Iliopoulos. "BioTextQuest+: a knowledge integration platform for literature mining and concept discovery." Bioinformatics (Oxford, England) 31, no. 6 (2015): 979.

Papanikolaou, Nikolas, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, V. J. Promponas, and Ioannis Iliopoulos. "BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery." Bioinformatics (Oxford, England) 30, no. 22 (2014): 3249-56.

Papanikolaou, Nikolas, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, and V. J. Promponas. "BioTextQuest: a web-based biomedical text mining suite for concept discovery." Bioinformatics (Oxford, England) 27, no. 23 (2011): 3327-8.

Promponas, V. J., A. J. Enright, S. Tsoka, D. P. Kreil, C. Leroy, S. J. Hamodrakas, C. Sander, and Christos A. Ouzounis. "CAST: an iterative algorithm for the complexity analysis of sequence tracts." Bioinformatics (Oxford, England) 16 (2000): 915-922.

Psomopoulos, Fotis E., Victoria I. Siarkou, Nikolas Papanikolaou, Ioannis Iliopoulos, Athanasios S. Tsaftaris, V. J. Promponas, and Christos A. Ouzounis. "The chlamydiales pangenome revisited: structural stability and functional coherence." Genes 3, no. 2 (2012): 291-319.

Savvides, A., V. J. Promponas, and K. Fokianos. "Clustering of biological time series by cepstral coefficients based distances." Pattern Recognition 41 (2008): 2398-2412.

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