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Journal Article
Pasquier, C. M., V. J. Promponas, and S. J. Hamodrakas. "PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications." Proteins 44 (2001): 361-369.
Papasaikas, P. K., P. G. Bagos, Z. I. Litou, V. J. Promponas, and S. J. Hamodrakas. "PRED-GPCR: GPCR recognition and family classification server." Nucleic acids research 32 (2004): W380-2.
Agathocleous, M., G. Christodoulou, V. J. Promponas, C. Christodoulou, V. Vassiliades, and A. Antoniou. "Protein Secondary Structure Prediction with Bidirectional Recurrent Neural Nets: Can Weight Updating for Each Residue Enhance Performance?" Artificial Intelligence Applications and Innovations (2010): 128-137.
Panayidou, Stavria, Kaliopi Georgiades, Theodoulakis Christofi, Stella Tamana, V. J. Promponas, and Yiorgos Apidianakis. "Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence." Scientific reports 10, no. 1 (2020): 9505.
Michael, Eleni, Savvas Polydorides, V. J. Promponas, Paris Skourides, and Georgios Archontis. "Recognition of LD motifs by the focal adhesion targeting domains of focal adhesion kinase and proline-rich tyrosine kinase 2-beta: Insights from molecular dynamics simulations." Proteins: Structure, Function, and Bioinformatics 89 (2020): 29-52.
Tsoka, S., V. J. Promponas, and Christos A. Ouzounis. "Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case." FEBS letters 451 (1999): 354-355.
Promponas, V. J., Katerina R. Katsani, Benjamin J. Blencowe, and Christos A. Ouzounis. "Sequence evidence for common ancestry of eukaryotic endomembrane coatomers." Scientific reports 6 (2016): 22311.
Ioannou, A., K. Fokianos, and V. J. Promponas. "Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study." BioSystems 100 (2010): 132-143.
Moreno-Indias, Isabel, Leo Lahti, Miroslava Nedyalkova, Ilze Elbere, Gennady Roshchupkin, Muhamed Adilovic, Onder Aydemir, Burcu Bakir-Gungor, Enrique Carrillo-de Santa Pau, Domenica D’Elia et al. "Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions." Frontiers in Microbiology 12 (2021): 277.
Tørresen, Ole K., Bastiaan Star, Pablo Mier, Miguel A. Andrade-Navarro, Alex Bateman, Patryk Jarnot, Aleksandra Gruca, Marcin Grynberg, Andrey V. Kajava, V. J. Promponas et al. "Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases." Nucleic acids research 47, no. 21 (2019): 10994-11006.

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by Dr. Radut.