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BRL publications

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Journal Article
Kalvari, Ioanna, Stelios Tsompanis, Nitha C. Mulakkal, Richard Osgood, Terje Johansen, Ioannis P. Nezis, and V. J. Promponas. "iLIR: A web resource for prediction of Atg8-family interacting proteins." Autophagy 10, no. 5 (2014): 913-25.
Jacomin, Anne-Claire, Siva Samavedam, V. J. Promponas, and Ioannis P. Nezis. "iLIR database: A web resource for LIR motif-containing proteins in eukaryotes." Autophagy 12, no. 10 (2016): 1945-1953.
Davey, Norman E., Madan M. Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Zsuzsanna Dosztanyi, Rachel Drysdale, Richard J. Edwards, Arne Elofsson, Isabella C. Felli et al. "An intrinsically disordered proteins community for ELIXIR." F1000Research 8 (2019).
Theodosiou, Athina, and V. J. Promponas. "LaTcOm: a web server for visualizing rare codon clusters in coding sequences." Bioinformatics (Oxford, England) (2011).
Kirmitzoglou, Ioannis, and V. J. Promponas. "LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences." Bioinformatics (Oxford, England) 31, no. 13 (2015): 2208-10.
Kannas, Christos C., Ioanna Kalvari, George Lambrinidis, Christiana M. Neophytou, Christiana G. Savva, Ioannis Kirmitzoglou, Zinonas Antoniou, Kleo G. Achilleos, David Scherf, Chara A. Pitta et al. "LiSIs: An Online Scientific Workflow System for Virtual Screening." Combinatorial chemistry & high throughput screening 18, no. 3 (2015): 281-95.
Ntountoumi, Chrysa, Panayotis Vlastaridis, Dimitris Mossialos, Constantinos Stathopoulos, Ioannis Iliopoulos, V. J. Promponas, Stephen G. Oliver, and Grigoris D. Amoutzias. "Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved." Nucleic acids research 47, no. 19 (2019): 9998-10009.
Hamodrakas, S. J., Ioannis Iliopoulos, Christos A. Ouzounis, P. G. Bagos, and V. J. Promponas. "Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics." Computational and structural biotechnology journal 6 (2013): e201303006.
Pasquier, C. M., V. J. Promponas, G. A. Palaios, J. S. Hamodrakas, and S. J. Hamodrakas. "A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm." Protein engineering 12 (1999): 381-385.
Jarnot, Patryk, Joanna Ziemska-Legiecka, Laszlo Dobson, Matthew Merski, Pablo Mier, Miguel A. Andrade-Navarro, John M. Hancock, Zsuzsanna Dosztányi, Lisanna Paladin, Marco Necci et al. "PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins." Nucleic Acids Research (2020).


by Dr. Radut.