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2014
Promponas, V. J., Christos A. Ouzounis, and Ioannis Iliopoulos. "Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey." Briefings in bioinformatics 15, no. 3 (2014): 443-54.
Katsani, Katerina R., Manuel Irimia, Christos Karapiperis, Zacharias G. Scouras, Benjamin J. Blencowe, V. J. Promponas, and Christos A. Ouzounis. "Functional genomics evidence unearths new moonlighting roles of outer ring coat nucleoporins." Scientific reports 4 (2014): 4655.
Tsiknakis, Manolis, V. J. Promponas, Norbert Graf, May D. Wang, Stephen T. C. Wong, Nikolaos Bourbakis, and Constantinos S. Pattichis. "Guest editorial: Computational solutions to large-scale data management and analysis in translational and personalized medicine." IEEE journal of biomedical and health informatics 18, no. 3 (2014): 720-1.
Kalvari, Ioanna, Stelios Tsompanis, Nitha C. Mulakkal, Richard Osgood, Terje Johansen, Ioannis P. Nezis, and V. J. Promponas. "iLIR: A web resource for prediction of Atg8-family interacting proteins." Autophagy 10, no. 5 (2014): 913-25.
2013
Samara, Pinelopi, Hubert Kalbacher, Kyriaki Ioannou, Dorel L. Radu, Evangelia Livaniou, V. J. Promponas, Wolfgang Voelter, and Ourania Tsitsilonis. "Development of an ELISA for the quantification of the C-terminal decapeptide prothymosin α(100-109) in sera of mice infected with bacteria." Journal of immunological methods 395, no. 1-2 (2013): 54-62.
Papadopoulos, Agathoklis, Ioannis Kirmitzoglou, V. J. Promponas, and Theocharis Theocharides. "GPU technology as a platform for accelerating local complexity analysis of protein sequences." Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference 2013 (2013): 2684-7.
Hamodrakas, S. J., Ioannis Iliopoulos, Christos A. Ouzounis, P. G. Bagos, and V. J. Promponas. "Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics." Computational and structural biotechnology journal 6 (2013): e201303006.
2012
Psomopoulos, Fotis E., Victoria I. Siarkou, Nikolas Papanikolaou, Ioannis Iliopoulos, Athanasios S. Tsaftaris, V. J. Promponas, and Christos A. Ouzounis. "The chlamydiales pangenome revisited: structural stability and functional coherence." Genes 3, no. 2 (2012): 291-319.
Kountouris, P., M. Agathocleous, V. J. Promponas, G. Christodoulou, S. Hadjicostas, V. Vassiliades, and C. Christodoulou. "A Comparative Study on Filtering Protein Secondary Structure Prediction." Computational Biology and Bioinformatics, IEEE/ACM Transactions on PP (2012): 1.
2011
Papanikolaou, Nikolas, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, and V. J. Promponas. "BioTextQuest: a web-based biomedical text mining suite for concept discovery." Bioinformatics (Oxford, England) 27, no. 23 (2011): 3327-8.

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