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Journal Article
Kountouris, P., M. Agathocleous, V. J. Promponas, G. Christodoulou, S. Hadjicostas, V. Vassiliades, and C. Christodoulou. "A Comparative Study on Filtering Protein Secondary Structure Prediction." Computational Biology and Bioinformatics, IEEE/ACM Transactions on PP (2012): 1.
Promponas, V. J., G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, and S. J. Hamodrakas. "CoPreTHi: a Web tool which combines transmembrane protein segment prediction methods." In silico biology 1 (1999): 159-162.
Necci, Marco, Damiano Piovesan, Md Tamjidul Hoque, Ian Walsh, Sumaiya Iqbal, Michele Vendruscolo, Pietro Sormanni, Chen Wang, Daniele Raimondi, Ronesh Sharma et al. "Critical assessment of protein intrinsic disorder prediction." Nature Methods 18, no. 5 (2021): 472-481.
Samara, Pinelopi, Hubert Kalbacher, Kyriaki Ioannou, Dorel L. Radu, Evangelia Livaniou, V. J. Promponas, Wolfgang Voelter, and Ourania Tsitsilonis. "Development of an ELISA for the quantification of the C-terminal decapeptide prothymosin α(100-109) in sera of mice infected with bacteria." Journal of immunological methods 395, no. 1-2 (2013): 54-62.
Mier, Pablo, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó et al. "Disentangling the complexity of low complexity proteins." Briefings in bioinformatics (2019).
Hatos, András, Borbála Hajdu-Soltész, Alexander M. Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykac-Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi et al. "DisProt: intrinsic protein disorder annotation in 2020." Nucleic acids research 48, no. D1 (2020): D269-D276.
Chasapi, Anastasia, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos C. Kyrpides, Evangelos Pafilis, Eleftherios Panteris et al. "Establishment of computational biology in Greece and Cyprus: Past, present, and future." PLoS computational biology 15, no. 12 (2019): e1007532.
Iliopoulos, Ioannis, S. Tsoka, M. A. Andrade, A. J. Enright, M. Carroll, P. Poullet, V. J. Promponas, T. D. Liakopoulos, G. A. Palaios, C. M. Pasquier et al. "Evaluation of annotation strategies using an entire genome sequence." Bioinformatics (Oxford, England) 19 (2003): 717-726.
Kastano, Kristina, Gábor Erdős, Pablo Mier, Gregorio Alanis-Lobato, V. J. Promponas, Zsuzsanna Dosztányi, and Miguel A. Andrade-Navarro. "Evolutionary Study of Disorder in Protein Sequences." Biomolecules 10 (2020): 1413.
Promponas, V. J., Christos A. Ouzounis, and Ioannis Iliopoulos. "Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey." Briefings in bioinformatics 15, no. 3 (2014): 443-54.

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