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BRL publications

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Journal Article
Promponas, V. J., Ioannis Iliopoulos, and Christos A. Ouzounis. "Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure." Standards in genomic sciences 10 (2015): 108.
Pavlopoulos, Georgios A., V. J. Promponas, Christos A. Ouzounis, and Ioannis Iliopoulos. "Biological information extraction and co-occurrence analysis." Methods in molecular biology (Clifton, N.J.) 1159 (2014): 77-92.
Papanikolaou, Nikolas, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, V. J. Promponas, and Ioannis Iliopoulos. "BioTextQuest+: a knowledge integration platform for literature mining and concept discovery." Bioinformatics (Oxford, England) 31, no. 6 (2015): 979.
Papanikolaou, Nikolas, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, V. J. Promponas, and Ioannis Iliopoulos. "BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery." Bioinformatics (Oxford, England) 30, no. 22 (2014): 3249-56.
Papanikolaou, Nikolas, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, and V. J. Promponas. "BioTextQuest: a web-based biomedical text mining suite for concept discovery." Bioinformatics (Oxford, England) 27, no. 23 (2011): 3327-8.
Psomopoulos, Fotis E., Victoria I. Siarkou, Nikolas Papanikolaou, Ioannis Iliopoulos, Athanasios S. Tsaftaris, V. J. Promponas, and Christos A. Ouzounis. "The chlamydiales pangenome revisited: structural stability and functional coherence." Genes 3, no. 2 (2012): 291-319.
Chasapi, Anastasia, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos C. Kyrpides, Evangelos Pafilis, Eleftherios Panteris et al. "Establishment of computational biology in Greece and Cyprus: Past, present, and future." PLoS computational biology 15, no. 12 (2019): e1007532.
Iliopoulos, Ioannis, S. Tsoka, M. A. Andrade, A. J. Enright, M. Carroll, P. Poullet, V. J. Promponas, T. D. Liakopoulos, G. A. Palaios, C. M. Pasquier et al. "Evaluation of annotation strategies using an entire genome sequence." Bioinformatics (Oxford, England) 19 (2003): 717-726.
Promponas, V. J., Christos A. Ouzounis, and Ioannis Iliopoulos. "Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey." Briefings in bioinformatics 15, no. 3 (2014): 443-54.
Papanikolaou, N., K. Trachana, T. Theodosiou, V. J. Promponas, and Ioannis Iliopoulos. "Gene socialization: gene order, GC content and gene silencing in Salmonella." BMC genomics 10 (2009): 597.

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by Dr. Radut.