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2019
Iliopoulos, Ioannis, Sophia Ananiadou, Antoine Danchin, John Pa Ioannidis, Peter D. Katsikis, Christos A. Ouzounis, and V. J. Promponas. Hypothesis, analysis and synthesis: it’s all Greek to me! In bioRxiv. Cold Spring Harbor Laboratory, 2019.
Iliopoulos, Ioannis, Sophia Ananiadou, Antoine Danchin, John Pa Ioannidis, Peter D. Katsikis, Christos A. Ouzounis, and V. J. Promponas. "Hypothesis, analysis and synthesis, it's all Greek to me." eLife 8 (2019).
Ntountoumi, Chrysa, Panayotis Vlastaridis, Dimitris Mossialos, Constantinos Stathopoulos, Ioannis Iliopoulos, V. J. Promponas, Stephen G. Oliver, and Grigoris D. Amoutzias. "Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved." Nucleic acids research 47, no. 19 (2019): 9998-10009.
2015
Promponas, V. J., Ioannis Iliopoulos, and Christos A. Ouzounis. "Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure." Standards in genomic sciences 10 (2015): 108.
Papanikolaou, Nikolas, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, V. J. Promponas, and Ioannis Iliopoulos. "BioTextQuest+: a knowledge integration platform for literature mining and concept discovery." Bioinformatics (Oxford, England) 31, no. 6 (2015): 979.
2014
Pavlopoulos, Georgios A., V. J. Promponas, Christos A. Ouzounis, and Ioannis Iliopoulos. "Biological information extraction and co-occurrence analysis." Methods in molecular biology (Clifton, N.J.) 1159 (2014): 77-92.
Papanikolaou, Nikolas, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, V. J. Promponas, and Ioannis Iliopoulos. "BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery." Bioinformatics (Oxford, England) 30, no. 22 (2014): 3249-56.
Promponas, V. J., Christos A. Ouzounis, and Ioannis Iliopoulos. "Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey." Briefings in bioinformatics 15, no. 3 (2014): 443-54.
2013
Hamodrakas, Stavros J., Ioannis Iliopoulos, Christos A. Ouzounis, Pantelis G. Bagos, and V. J. Promponas. "Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics." Computational and structural biotechnology journal 6 (2013): e201303006.
2012
Psomopoulos, Fotis E., Victoria I. Siarkou, Nikolas Papanikolaou, Ioannis Iliopoulos, Athanasios S. Tsaftaris, V. J. Promponas, and Christos A. Ouzounis. "The chlamydiales pangenome revisited: structural stability and functional coherence." Genes 3, no. 2 (2012): 291-319.

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