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Preprint
Promponas, V. J., Katerina R. Katsani, Benjamin J. Blencowe, and Christos A. Ouzounis. Sequence evidence for common ancestry of eukaryotic endomembrane coatomers In bioRxiv. Cold Spring Harbor Laboratory, 2015.
Panayidou, Stavria, Kaliopi Georgiades, Theodoulakis Christofi, Stella Tamana, V. J. Promponas, and Yiorgos Apidianakis. Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence In bioRxiv. Cold Spring Harbor Laboratory, 2019.
Iliopoulos, Ioannis, Sophia Ananiadou, Antoine Danchin, John Pa Ioannidis, Peter D. Katsikis, Christos A. Ouzounis, and V. J. Promponas. Hypothesis, analysis and synthesis: it’s all Greek to me! In bioRxiv. Cold Spring Harbor Laboratory, 2019.
Journal Article
Pasquier, C. M., V. J. Promponas, N. J. Varvayannis, and S. J. Hamodrakas. "A web server to locate periodicities in a sequence." Bioinformatics (Oxford, England) 14 (1998): 749-750.
Nikolaou, N., P. Sampaziotis, M. Aplikioti, A. Drakos, Ioannis Kirmitzoglou, M. Argyrou, N. Papamarkos, and V. J. Promponas. "VeSTIS: A Versatile Semi-Automatic Taxon Identification System from Digital Images." (2010).
Tamana, Stella, and V. J. Promponas. "An updated view of the oligosaccharyltransferase complex in Plasmodium." Glycobiology 29, no. 5 (2019): 385-396.
Bagos, P. G., T. D. Liakopoulos, V. J. Promponas, and S. J. Hamodrakas. "Topology prediction of β-barrel outer membrane proteins." PINSA 71 (2005): 19-41.
KIRSCHEL, A. N. G., M. L. CODY, Z. T. HARLOW, V. J. Promponas, E. E. VALLEJO, and C. E. TAYLOR. "Territorial dynamics of Mexican Ant-thrushes Formicarius moniliger revealed by individual recognition of their songs." Ibis (2011).
Tørresen, Ole K., Bastiaan Star, Pablo Mier, Miguel A. Andrade-Navarro, Alex Bateman, Patryk Jarnot, Aleksandra Gruca, Marcin Grynberg, Andrey V. Kajava, V. J. Promponas et al. "Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases." Nucleic acids research 47, no. 21 (2019): 10994-11006.
Moreno-Indias, Isabel, Leo Lahti, Miroslava Nedyalkova, Ilze Elbere, Gennady Roshchupkin, Muhamed Adilovic, Onder Aydemir, Burcu Bakir-Gungor, Enrique Carrillo-de Santa Pau, Domenica D’Elia et al. "Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions." Frontiers in Microbiology 12 (2021): 277.

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