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2012
Kountouris, P., M. Agathocleous, V. J. Promponas, G. Christodoulou, S. Hadjicostas, V. Vassiliades, and C. Christodoulou. "A Comparative Study on Filtering Protein Secondary Structure Prediction." Computational Biology and Bioinformatics, IEEE/ACM Transactions on PP (2012): 1.
2011
Papanikolaou, Nikolas, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, and V. J. Promponas. "BioTextQuest: a web-based biomedical text mining suite for concept discovery." Bioinformatics (Oxford, England) 27, no. 23 (2011): 3327-8.
Theodosiou, Athina, and V. J. Promponas. "LaTcOm: a web server for visualizing rare codon clusters in coding sequences." Bioinformatics (Oxford, England) (2011).
KIRSCHEL, A. N. G., M. L. CODY, Z. T. HARLOW, V. J. Promponas, E. E. VALLEJO, and C. E. TAYLOR. "Territorial dynamics of Mexican Ant-thrushes Formicarius moniliger revealed by individual recognition of their songs." Ibis (2011).
2010
Agathocleous, M., G. Christodoulou, V. J. Promponas, C. Christodoulou, V. Vassiliades, and A. Antoniou. "Protein Secondary Structure Prediction with Bidirectional Recurrent Neural Nets: Can Weight Updating for Each Residue Enhance Performance?" Artificial Intelligence Applications and Innovations (2010): 128-137.
Ioannou, A., K. Fokianos, and V. J. Promponas. "Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study." BioSystems 100 (2010): 132-143.
Nikolaou, N., P. Sampaziotis, M. Aplikioti, A. Drakos, I. Kirmitzoglou, M. Argyrou, N. Papamarkos, and V. J. Promponas. "VeSTIS: A Versatile Semi-Automatic Taxon Identification System from Digital Images." (2010).
2009
Papanikolaou, N., K. Trachana, T. Theodosiou, V. J. Promponas, and I. Iliopoulos. "Gene socialization: gene order, GC content and gene silencing in Salmonella." BMC genomics 10 (2009): 597.
Promponas, V. J.. "A simple clustering approach for pathogenic strain identification based on local and global amino acid compositional signatures from genomic sequences: the Escherichia genus case." In Information Technology and Applications in Biomedicine, 2009. ITAB 2009. 9th International Conference on, 1-4. IEEE, 2009.
2008
Savvides, A., V. J. Promponas, and K. Fokianos. "Clustering of biological time series by cepstral coefficients based distances." Pattern Recognition 41 (2008): 2398-2412.
2005
Bagos, P. G., T. D. Liakopoulos, V. J. Promponas, and S. J. Hamodrakas. "Topology prediction of β-barrel outer membrane proteins." PINSA 71 (2005): 19-41.
2004
Papasaikas, P. K., P. G. Bagos, Z. I. Litou, V. J. Promponas, and S. J. Hamodrakas. "PRED-GPCR: GPCR recognition and family classification server." Nucleic acids research 32 (2004): W380-2.
2003
Iliopoulos, I., S. Tsoka, M. A. Andrade, A. J. Enright, M. Carroll, P. Poullet, V. J. Promponas, T. D. Liakopoulos, G. A. Palaios, C. M. Pasquier et al. "Evaluation of annotation strategies using an entire genome sequence." Bioinformatics (Oxford, England) 19 (2003): 717-726.
Vernikos, G. S., C. G. Gkogkas, V. J. Promponas, and S. J. Hamodrakas. "GeneViTo: visualizing gene-product functional and structural features in genomic datasets." BMC bioinformatics 4 (2003): 53.
2001
Pasquier, C. M., V. J. Promponas, and S. J. Hamodrakas. "PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications." Proteins 44 (2001): 361-369.
2000
Promponas, V. J., A. J. Enright, S. Tsoka, D. P. Kreil, C. Leroy, S. J. Hamodrakas, C. Sander, and C. A. Ouzounis. "CAST: an iterative algorithm for the complexity analysis of sequence tracts." Bioinformatics (Oxford, England) 16 (2000): 915-922.
1999
Promponas, V. J., G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, and S. J. Hamodrakas. "CoPreTHi: a Web tool which combines transmembrane protein segment prediction methods." In silico biology 1 (1999): 159-162.
Pasquier, C. M., V. J. Promponas, G. A. Palaios, J. S. Hamodrakas, and S. J. Hamodrakas. "A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm." Protein engineering 12 (1999): 381-385.
Tsoka, S., V. J. Promponas, and C. A. Ouzounis. "Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case." FEBS letters 451 (1999): 354-355.
1998
Pasquier, C. M., V. J. Promponas, N. J. Varvayannis, and S. J. Hamodrakas. "A web server to locate periodicities in a sequence." Bioinformatics (Oxford, England) 14 (1998): 749-750.


by Dr. Radut.