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BRL publications

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2022
Charalampous, Konstantinos, Michalis Agathocleous, Chris Christodoulou, and Vasilis Promponas. "Solving the Protein Secondary Structure Prediction Problem With the Hessian Free Optimization Algorithm." IEEE Access 10 (2022): 27759-27770.
2021
Necci, Marco, Damiano Piovesan, Md Tamjidul Hoque, Ian Walsh, Sumaiya Iqbal, Michele Vendruscolo, Pietro Sormanni, Chen Wang, Daniele Raimondi, Ronesh Sharma et al. "Critical assessment of protein intrinsic disorder prediction." Nature Methods 18, no. 5 (2021): 472-481.
Quaglia, Federica, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos et al. "DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation." Nucleic Acids Research 50 (2021): D480-D487.
Klionsky, Daniel J., Amal Kamal Abdel-Aziz, ..., V. J. Promponas, ..., and Chun-Kit Tong. "Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)." Autophagy 17, no. 1 (2021): 1-382.
Moreno-Indias, Isabel, Leo Lahti, Miroslava Nedyalkova, Ilze Elbere, Gennady Roshchupkin, Muhamed Adilovic, Onder Aydemir, Burcu Bakir-Gungor, Enrique Carrillo-de Santa Pau, Domenica D’Elia et al. "Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions." Frontiers in Microbiology 12 (2021): 277.
2020
Chasapi, Anastasia, V. J. Promponas, and Christos A. Ouzounis. "The bioinformatics wealth of nations." Bioinformatics (2020).
Hatos, András, Borbála Hajdu-Soltész, Alexander M. Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykac-Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi et al. "DisProt: intrinsic protein disorder annotation in 2020." Nucleic acids research 48, no. D1 (2020): D269-D276.
Kastano, Kristina, Gábor Erdős, Pablo Mier, Gregorio Alanis-Lobato, V. J. Promponas, Zsuzsanna Dosztányi, and Miguel A. Andrade-Navarro. "Evolutionary Study of Disorder in Protein Sequences." Biomolecules 10 (2020): 1413.
Jarnot, Patryk, Joanna Ziemska-Legiecka, Laszlo Dobson, Matthew Merski, Pablo Mier, Miguel A. Andrade-Navarro, John M. Hancock, Zsuzsanna Dosztányi, Lisanna Paladin, Marco Necci et al. "PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins." Nucleic Acids Research (2020).
Panayidou, Stavria, Kaliopi Georgiades, Theodoulakis Christofi, Stella Tamana, V. J. Promponas, and Yiorgos Apidianakis. "Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence." Scientific reports 10, no. 1 (2020): 9505.

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by Dr. Radut.