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Seminar - PDB entries

Οι εγγραφές της Protein Data Bank τις οποίες θα μελετήσετε για το σεμινάριό σας είναι οι παρακάτω:
3MYI
3PVF
2W9G
1NQE
1E12

Extra slideshow

Lecture on Biological Networks and Introduction to Microarray Analysis: PDF slides.
 

Καλή Ακαδημαϊκή Χρονιά 2014-2015!!

Μπορείτε να κατεβάσετε το συμβόλαιο μαθήματος από τον παρακάτω σύνδεσμο:
http://troodos.biol.ucy.ac.cy/BRLnew/drupal-7.0/sites/default/files/BIO331/Winter2014/AnalytikoProgramma.pdf

Lecture: Complexity and simplicity in biological systems

Lecture slides available for download (PDF file).

Project Files (on the "student" server).

You may copy the following files into your student account:
Assignment 1:

Details on seminar projects

Follow the link to find more details on your project: Project details

Seminar information

Group assignments and some initial guidelines [Download].

Pairwise sequence comparison - a short exersise

Here are a few sequences in FASTA format:
Sequence 1: Collagen alpha-1(II) chain, Homo sapiens 
Sequence 2: Collagen alpha-1(II) chain, Bos taurus
Sequence 3: Glycine-rich RNA-binding protein 8, Arabidopsis thaliana
 
Let's do the tricks now!
Dot plot using Dotlet (Swiss Institute of Bioinformatics).

Notes on Sequence Analysis - Σημειώσεις στην Ανάλυση Αλληλουχιών

1st package of notes [in Greek].
Covers an introduction in biological macromolecular sequences and computational methods for sequence similarity analysis. [Download]. 
2nd package of notes [in Greek].

Linux/Unix Basics

New material posted (PDF lecture slides) - Διαλέξεις μαθήματος

Course syllabus - Περιεχόμενο Μαθήματος

/BRLnew/drupal-7.0/sites/default/files/AnalytikoProgramma.pdf

/BRLnew/drupal-7.0/sites/default/files/AnalytikoProgrammaDialeksewn.pdf

Σημείωση: Εκ παραδρομής οι ημερομηνίες στο αντίτυπο που πήρατε στην 1η διάλεξη αναγράφουν εκ παραδρομής 2010 αντί για 2011 ...

Library Announcement: e-books - Βιβλία Κλειστού Δανεισμού

The following book titles are reserved for this course in the UCY library, but also in electronic form (e-book):  

 

- Bioinformatics and Functional Genomics by Jonathan Pevsner, John Wiley & Sons.  

- Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins (Methods of Biochemical Analysis) by Andreas D. Baxevanis, and Francis Ouellette, John Wiley& Sons  

 

You may read or borrow them from the UCY library web-page by following the links

BIO 331 - Computational & Systems Biology (formerly: Principles and Methods of Bioinformatics [Fall 2011 - 2012])

Welcome to the BIO 331 - Computational & Systems Biology (formerly: Principles and Methods of Bioinformatics) course!

 

Here you will find all related information, such as:

  • teaching material (presentations, notes)
  • data and instructions for assignments
  • links to relevant resources

Please, visit the page regularly, it is updated on a regular basis.  

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by Dr. Radut.